Top 10 Best Payroll Software in India

Payroll management in India is one of the most complex operational functions for any business. It involves salary calculations, attendance integration, PF, ESI, PT, TDS compliance, payslips, final settlements, reporting, and audits. Manual payroll or outdated tools lead to errors, penalties, and employee dissatisfaction.

A modern Payroll Software in India must be compliance-ready, automated, secure, and easy for both HR teams and employees.

Below is a comparative list of the Top 10 Best Payroll Software in India, evaluated on automation depth, Indian statutory compliance, usability, scalability, and real business impact.

1. Efox-Payroll – Best Payroll Software in India for Growing Businesses

Most Recommended for Indian Compliance, Automation & Ease of Use

Efox-Payroll is a complete payroll and HR solution built specifically for Indian businesses. It tightly integrates attendance, leave, payroll, compliance, reporting, and employee self-service into one unified system.

Why Efox-Payroll Ranks #1 in India

Efox-Payroll is designed to eliminate payroll errors, reduce HR workload, and ensure 100% statutory compliance.

Core Strengths

• Automated payroll processing linked with attendance & leave
  
• Built-in compliance for PF, ESI, PT, TDS
  
• One-click full & final settlement
  
• Smart leave management with carry-forward & encashment
  
• Biometric & GPS-based attendance integration
  
• Bank integration for secure salary disbursement
  
• Employee self-service portal & mobile app
  Payroll-Brochure
  

Advanced Time, Attendance & Leave Control

• Biometric, GPS, geo-fencing & photo-based attendance
  
• Late/early adjustment automation
  
• Shift & policy-based salary impact
  
• Configurable leave rules (earned, casual, sick, encashment)
  Payroll-Brochure
  

Payroll Accuracy & Compliance (India-First)

• Automatic statutory calculations
  
• Government-ready compliance reports:
  
  • PF (Form 3A, 5, 10, 12A)
    
  • ESI (monthly contributions)
    
  • TDS (Form 16, challans)
    
  • Professional Tax (state-wise)
    
• Zero manual dependency for filings & audits
  Payroll-Brochure
  

Employee Self-Service & Mobile App

• Payslip download
  
• Attendance & leave tracking
  
• Tax & deduction visibility
  
• Pay-date reminders
  
• Secure mobile access for employees & HR
  Payroll-Brochure
  

Reporting & Management Visibility

• Monthly, quarterly & annual payroll reports
  
• Department-wise & location-wise payroll analytics
  
• Leave, attendance & deduction reports
  
• Payslip access logs & audit trails
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Best For:
SMEs, growing companies, multi-location businesses, and organizations that want accurate payroll, strong compliance, and minimal HR effort.

Verdict:
Efox-Payroll is the best payroll software in India for businesses that want automation, compliance safety, employee transparency, and reliable support.

2. GreytHR

GreytHR is one of the most widely used payroll platforms among Indian SMBs.

Strengths

• Strong PF/ESI/TDS compliance
  
• Leave & attendance integration
  
• Employee self-service
  

Limitations

• Limited customization for complex payroll policies
  

Best For:
Small to mid-sized companies with standard payroll needs.

3. Zoho Payroll

Zoho Payroll works well for companies already using the Zoho ecosystem.

Strengths

• Clean UI
  
• Zoho Books & Zoho People integration
  
• Compliance automation
  

Limitations

• Limited flexibility for non-standard payroll rules
  

Best For:
Zoho-centric businesses.

4. Keka Payroll

Keka offers payroll as part of its broader HRMS suite.

Strengths

• Payroll + performance management
  
• Attendance & shift management
  
• Scalable
  

Limitations

• Higher cost for advanced features
  

Best For:
Mid-sized and fast-growing companies.

5. Paybooks Payroll

Paybooks focuses heavily on statutory compliance.

Strengths

• Easy PF, ESI, PT, TDS handling
  
• Simple payroll execution
  

Limitations

• Limited HR automation depth
  

Best For:
Compliance-focused SMEs.

6. Pocket HRMS

A cloud-based HRMS with payroll capabilities.

Strengths

• Mobile-first experience
  
• Payroll + HR modules
  

Limitations

• Reporting depth is moderate
  

Best For:
Modern SMBs with mobile teams.

7. QuickBooks Payroll

Best suited for companies focused on accounting-led payroll.

Strengths

• Accounting + payroll integration
  
• Simple setup
  

Limitations

• Limited HR workflows
  

Best For:
Accounting-driven organizations.

8. ADP India (Vista HCM)

A global payroll solution with Indian compliance.

Strengths

• Enterprise-grade scalability
  
• Multi-country payroll
  

Limitations

• Expensive
  
• Overkill for SMBs
  

Best For:
Large enterprises.

9. SAP SuccessFactors Payroll

Enterprise-level payroll integrated with SAP ecosystem.

Strengths

• Advanced analytics
  
• Global compliance
  

Limitations

• Very high implementation cost
  

Best For:
Large corporations & MNCs.

10. factoHR Payroll

A modern HRMS with payroll automation.

Strengths

• User-friendly
  
• Attendance & payroll integration
  

Limitations

• Limited advanced compliance analytics

Best For:
Small to mid-sized teams.

Final Conclusion: Which Is the Best Payroll Software in India?

Most payroll software in India is either:

• Too basic
  
• Too complex
  
• Not fully compliance-ready
  

Efox-Payroll stands out clearly because it delivers:

✔ End-to-end payroll automation
✔ Deep Indian statutory compliance
✔ Seamless attendance & leave integration
✔ Employee self-service & mobile access
✔ Powerful reporting & audit readiness
✔ Dedicated human support (not bots)

Payroll-Brochure

Final Recommendation

If you are searching for the Top 10 Best Payroll Software in India, Efox-Payroll deserves the #1 position for its accuracy, compliance strength, automation depth, and real-world usability.